Changelog

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CHANGELOG.md

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All notable changes to this project.

[1.6.2] - 2026-11-08

Adopt the Dependabot-updated Plastid and Receptor lockfiles, clearing the open MCP SDK and @hono/node-server advisories.
Replace Plastid's "@modelcontextprotocol/sdk": "latest" with a caret range so future lock refreshes are reviewable instead of silent.
Plastid keeps 12 passing regressions and npm audit reports zero vulnerabilities; Receptor keeps 123 passing tests.
Cell versions and every other pin are unchanged from 1.6.1.

Add setup.sh mode to convert an existing managed installation between individual, runtime, docker, docker-runtime, and nix in place.
Reuse cells already built at the pinned revision, preserve data/ and the profile/snapshot, and verify the converted installation with doctor before reporting success.
Restore the previous manifest and leave a pending marker when verification fails; refuse pending, unmanaged, or unchanged targets.
Cover host-family switching, transport guards, pending markers, and Docker round-trips in tests and CI. Enzyme, runtime, and other cell pins are unchanged from 1.6.0.

Pin Enzyme 4.0.0, whose google_search now requires query. The old q argument is rejected rather than translated; batch tools keep queries.
Share one strict search schema between Enzyme's shipped and modular entrypoints: trimmed non-empty queries, integer result counts from 1 to 10, unknown fields refused before any provider request.
Add setup.sh mode to convert a managed installation between individual, runtime, Docker, Docker-runtime, and Nix in place, reusing verified builds and preserving data directories.
Regenerate the canonical tool catalog and documentation from the new Enzyme schema. Tool counts and all other cell/runtime pins are unchanged.
Preserve every historical snapshot from v1.0.0 through v1.5.3.

Render Genome relation links in canonical order so replicas with different SQLite insertion orders produce identical notes.
Add an insertion-order regression; all 19 suites / 264 tests, the TypeScript build and zero-warning source lint pass.
Preserve the published 1.5.2 snapshot and all other cell/runtime pins.

Pin Genome's replicated vault timestamp/order convergence fix and explicit archived repair API; ordinary CLI sync still leaves divergent notes unresolved.
Replace Genome's unsafe any types with typed database results and validated request/import boundaries. Source lint now covers top-level files and fails on warnings; 19 suites / 263 tests and the TypeScript build pass.
Retain the managed individual/runtime/Docker/Nix installer and doctor shipped after 1.5.1; its mechanism acceptance remains documented separately.
Keep all other cell/runtime pins and historical versioned snapshots unchanged. No vault content, credentials, or operational backups are included in this source snapshot.

Refresh current EN/ID web pages, setup/integration/troubleshooting guides, and all ten cells' version/tool references from canonical metadata.
Validate generated documentation, local links/anchors, and browser configuration previews before Pages publication.
Refresh sanitized client examples and document deferred security, provider/hardware validation, SQLite safety, and optional Obsidian mirroring accurately.
Pin documentation-only cell commits in a new immutable snapshot. Cells remain 3.0.0; runtime remains 1.2.0. Historical snapshots, vendor versions, and live services are unchanged.

Pin runtime 1.2.0 with true first-call startup and profile/build/config-aware schema caching.
Generate standalone schema catalogs and documentation counts from canonical inventory metadata and isolated feature-variant probes.
Share inventory validation/path resolution across config, doctor, version, profile, and integration tooling; verify runtime catalog parity without child startup.
Measure cold/warm routing across all profiles; retain standalone compatibility and machine selections.

Pin current published cell/runtime revisions in a new snapshot; retain v1.0.0–v1.3.0 unchanged and correct runtime snapshot metadata to 1.1.0.
Include Genome memory safety, atomic claims, runtime timeout recovery, and clean-install Zod 4 compatibility fixes.
Replace process-alive smoke checks with isolated MCP initialize/tool discovery and strict version/pin agreement.
Correct Codex TOML to mcp_servers, escape generated values, and verify the 80-combination configuration matrix.
Record native x86_64/aarch64 Linux Nix builds separately from client authentication, hardware testing, and unresolved vault conflicts.

Version reset to 3.0.0 — per-server version metadata baseline reset (Phase 7). All package.json, MCP ServerInfo.version, and HTTP metadata now report 3.0.0. This is a metadata/interface baseline reset; for hela-plastid it is not an upgrade from the previous 4.2.0 advert.